If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ), 'gf_id' => 'HOM05D000948', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000948' ), 'data_identifier' => 'HOM05D000948', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000948', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '633', 'num_species' => '94' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p42230' => 'bna', 'A03p68170' => 'bna', 'A04p33770' => 'bna', 'A05p05390' => 'bna', 'A06p09260' => 'bna', 'A06p29010' => 'bna', 'A08p32890' => 'bna', 'A09p07620' => 'bna', 'A09p52930' => 'bna', 'A09p53000' => 'bna', 'A09p53030' => 'bna', 'A09p63900' => 'bna', 'Aa31LG10G15030' => 'aar', 'Aa31LG11G1320' => 'aar', 'Aa31LG1G26890' => 'aar', 'Aa31LG2G360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.2712' => 'aag', 'Actinidia02090' => 'ach', 'Actinidia03081' => 'ach', 'Actinidia03082' => 'ach', 'Actinidia12254' => 'ach', 'Actinidia14464' => 'ach', 'Actinidia20241' => 'ach', 'Actinidia31403' => 'ach', 'Actinidia31792' => 'ach', 'Ah.12g058220' => 'amhyb', 'Ah.16g109490' => 'amhyb', 'Ah.16g109510' => 'amhyb', 'AL1G23650' => 'aly', 'AL2G12920' => 'aly', 'AL4G44500' => 'aly', 'AL5G43080' => 'aly', 'AL8G39100' => 'aly', 'Aqoxy7G00647' => 'aox', 'Aqoxy7G00650' => 'aox', 'arahy.Tifrunner.gnm1.ann1.010Z0V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2KWP45' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CLZ3BH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CRB5RV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HF0VZ8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KR8V1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q9XQ1F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R64JTA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X1N656' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YD7H7P' => 'arhy', 'AT1G12320' => 'ath', 'AT1G62840' => 'ath', 'AT2G45360' => 'ath', 'AT3G60780' => 'ath', 'AT5G62280' => 'ath', 'ATR0602G064' => 'atr', 'ATR0810G224' => 'atr', 'ATR0810G269' => 'atr', 'ATR1089G129' => 'atr', 'ATR1089G133' => 'atr', 'Atru.chr1.647' => 'acertr', 'Atru.chr5.298' => 'acertr', 'Atru.chr5.299' => 'acertr', 'Atru.chr5.300' => 'acertr', 'Atru.chr5.670' => 'acertr', 'Atru.chr9.1433' => 'acertr', 'AUR62004208' => 'cqu', 'AUR62016108' => 'cqu', 'AUR62016109' => 'cqu', 'AUR62017390' => 'cqu', 'AUR62035054' => 'cqu', 'AUR62035055' => 'cqu', 'AUR62038529' => 'cqu', 'BcaB02g08973' => 'bca', 'BcaB02g08978' => 'bca', 'BcaB03g13195' => 'bca', 'BcaB07g29786' => 'bca', 'BcaB08g34283' => 'bca', 'BcaC01g01400' => 'bca', 'BcaC01g06919' => 'bca', 'BcaC02g10414' => 'bca', 'BcaC02g12216' => 'bca', 'BcaC04g23420' => 'bca', 'BcaC05g25215' => 'bca', 'BcaC06g31915' => 'bca', 'BcaC07g40597' => 'bca', 'BcaC07g40598' => 'bca', 'BcaC07g41705' => 'bca', 'BcaC07g42637' => 'bca', 'BcaC07g42639' => 'bca', 'BcaNung01402' => 'bca', 'BcaNung06720' => 'bca', 'BcaNung07378' => 'bca', 'BolC2t12267H' => 'bol', 'BolC3t18717H' => 'bol', 'BolC3t21479H' => 'bol', 'BolC4t22255H' => 'bol', 'BolC4t24449H' => 'bol', 'BolC4t28657H' => 'bol', 'BolC5t29827H' => 'bol', 'BolC8t49165H' => 'bol', 'BolC8t51161H' => 'bol', 'BolC8t52284H' => 'bol', 'BolC9t53762H' => 'bol', 'BraA01t02648Z' => 'bra', 'BraA02t09151Z' => 'bra', 'BraA04t18839Z' => 'bra', 'BraA05t19509Z' => 'bra', 'BraA06t24113Z' => 'bra', 'BraA06t25846Z' => 'bra', 'BraA08t35211Z' => 'bra', 'BraA09t36414Z' => 'bra', 'BraA09t40725Z' => 'bra', 'BraA09t40729Z' => 'bra', 'BraA09t41738Z' => 'bra', 'C02p62080' => 'bna', 'C03p64580' => 'bna', 'C03p91610' => 'bna', 'C04p06320' => 'bna', 'C04p29150' => 'bna', 'C04p71510' => 'bna', 'C05p10830' => 'bna', 'C08p15370' => 'bna', 'C08p35700' => 'bna', 'C08p47440' => 'bna', 'C09p08530' => 'bna', 'CAN.G1394.33' => 'can', 'CAN.G277.10' => 'can', 'CAN.G277.11' => 'can', 'CAN.G388.22' => 'can', 'CAN.G388.23' => 'can', 'CAN.G388.26' => 'can', 'CAN.G630.81' => 'can', 'CAN.G72.18' => 'can', 'CAN.G986.3' => 'can', 'CANSAT13G0004' => 'cansat', 'CANSAT21G2112' => 'cansat', 'CANSAT56G1647' => 'cansat', 'CANSAT56G2473' => 'cansat', 'CANSAT56G2570' => 'cansat', 'CARHR012620' => 'chi', 'CARHR048900' => 'chi', 'CARHR140570' => 'chi', 'CARHR171170' => 'chi', 'CARHR276060' => 'chi', 'Carub.0001s1199' => 'cru', 'Carub.0002s0214' => 'cru', 'Carub.0004s2799' => 'cru', 'Carub.0005s2753' => 'cru', 'Carub.0008s2297' => 'cru', 'Ca_06690_v3' => 'car', 'Ca_09896_v3' => 'car', 'Ca_12280_v3' => 'car', 'Ca_27112_v3' => 'car', 'Cc02_g03950' => 'ccan', 'Cc02_g03960' => 'ccan', 'Cc02_g23960' => 'ccan', 'Cc02_g23970' => 'ccan', 'Cc02_g39360' => 'ccan', 'Cc08_g13240' => 'ccan', 'Cc10_g08670' => 'ccan', 'CDE04G2902' => 'cde', 'Cfa001736' => 'cfa', 'Cfa003803' => 'cfa', 'Cfa008080' => 'cfa', 'Cfa008225' => 'cfa', 'Cfa012016' => 'cfa', 'Ciclev10006795m.g' => 'ccl', 'Ciclev10022126m.g' => 'ccl', 'Ciclev10022173m.g' => 'ccl', 'Ciclev10023319m.g' => 'ccl', 'Ciclev10023564m.g' => 'ccl', 'CiPaw.01G076300' => 'cil', 'CiPaw.01G262700' => 'cil', 'CiPaw.03G014600' => 'cil', 'CiPaw.04G062300' => 'cil', 'CiPaw.11G147400' => 'cil', 'CiPaw.12G104900' => 'cil', 'ClCG01G003640' => 'cla', 'ClCG05G002310' => 'cla', 'ClCG06G000420' => 'cla', 'COL.COLO4_06912' => 'col', 'COL.COLO4_12536' => 'col', 'COL.COLO4_12537' => 'col', 'COL.COLO4_14170' => 'col', 'COL.COLO4_23878' => 'col', 'Cpa.g.sc2603.1' => 'cpa', 'Cpa.g.sc2603.2' => 'cpa', 'Cpa.g.sc29.90' => 'cpa', 'Cpa.g.sc3.280' => 'cpa', 'Cpa.g.sc96.14' => 'cpa', 'CsaV3_3G009720' => 'csa', 'CsaV3_3G016310' => 'csa', 'CsaV3_5G003760' => 'csa', 'CsaV3_6G006220' => 'csa', 'CSS0008697' => 'camsi', 'CSS0012765' => 'camsi', 'CSS0019325' => 'camsi', 'CSS0028192' => 'camsi', 'CSS0030494' => 'camsi', 'CSS0045573' => 'camsi', 'DCAR_006801' => 'dca', 'DCAR_008456' => 'dca', 'DCAR_010101' => 'dca', 'DCAR_010104' => 'dca', 'DCAR_014614' => 'dca', 'DCAR_018121' => 'dca', 'DCAR_018122' => 'dca', 'DCAR_020204' => 'dca', 'DCAR_031523' => 'dca', 'Dinv22104' => 'din', 'Dinv22975' => 'din', 'Dinv28539' => 'din', 'Dinv35117' => 'din', 'Dinv37762' => 'din', 'Dinv39077' => 'din', 'Dinv43703' => 'din', 'Duzib084G0845' => 'dzi', 'Duzib084G0938' => 'dzi', 'Duzib133G0082' => 'dzi', 'Duzib133G0877' => 'dzi', 'Duzib138G1291' => 'dzi', 'Duzib205G0200' => 'dzi', 'Duzib205G1732' => 'dzi', 'ECA232G1804' => 'eca', 'ECA238G3539' => 'eca', 'ECA240G0770' => 'eca', 'EL10Ac1g01264' => 'bvu', 'EL10Ac3g05798' => 'bvu', 'EL10Ac3g05799' => 'bvu', 'Eucgr.D01988' => 'egr', 'Eucgr.D02375' => 'egr', 'Eucgr.E00474' => 'egr', 'FAN01G0303' => 'fan', 'FAN01G1138' => 'fan', 'FAN03G1569' => 'fan', 'FAN03G1950' => 'fan', 'FAN03G2561' => 'fan', 'FAN03G3446' => 'fan', 'FAN04G2759' => 'fan', 'FAN06G0254' => 'fan', 'FAN06G0314' => 'fan', 'FAN06G1534' => 'fan', 'FAN06G1922' => 'fan', 'FAN08G0269' => 'fan', 'FAN10G1275' => 'fan', 'FAN10G1623' => 'fan', 'FAN10G1873' => 'fan', 'FAN13G0129' => 'fan', 'FAN15G1264' => 'fan', 'FAN18G0187' => 'fan', 'FAN19G3221' => 'fan', 'FAN20G0058' => 'fan', 'FAN24G0387' => 'fan', 'FAN27G0206' => 'fan', 'FvH4_2g00920' => 'fve', 'FvH4_5g00680' => 'fve', 'FvH4_7g11620' => 'fve', 'FvH4_7g28130' => 'fve', 'Glyma.01G141100' => 'gma', 'Glyma.01G212100' => 'gma', 'Glyma.03G026000' => 'gma', 'Glyma.03G026600' => 'gma', 'Glyma.05G052800' => 'gma', 'Glyma.07G055700' => 'gma', 'Glyma.09G154500' => 'gma', 'Glyma.10G177400' => 'gma', 'Glyma.11G029700' => 'gma', 'Glyma.16G024400' => 'gma', 'Glyma.16G205000' => 'gma', 'Glyma.17G135100' => 'gma', 'Glyma.20G181701' => 'gma', 'Glyma.20G212700' => 'gma', 'Gohir.A03G011850' => 'ghi', 'Gohir.A07G138000' => 'ghi', 'Gohir.A08G134800' => 'ghi', 'Gohir.A08G134900' => 'ghi', 'Gohir.A08G173800' => 'ghi', 'Gohir.A08G229750' => 'ghi', 'Gohir.A11G007900' => 'ghi', 'Gohir.A12G101600' => 'ghi', 'Gohir.A12G101700' => 'ghi', 'Gohir.A12G221100' => 'ghi', 'Gohir.D03G158000' => 'ghi', 'Gohir.D07G143050' => 'ghi', 'Gohir.D08G155700' => 'ghi', 'Gohir.D08G155800' => 'ghi', 'Gohir.D08G192500' => 'ghi', 'Gohir.D08G250100' => 'ghi', 'Gohir.D11G007000' => 'ghi', 'Gohir.D12G104600' => 'ghi', 'Gohir.D12G104700' => 'ghi', 'Gohir.D12G223400' => 'ghi', 'Gorai.001G155100' => 'gra', 'Gorai.003G166500' => 'gra', 'Gorai.004G161900' => 'gra', 'Gorai.004G162000' => 'gra', 'Gorai.004G202500' => 'gra', 'Gorai.004G266700' => 'gra', 'Gorai.007G008400' => 'gra', 'Gorai.008G113900' => 'gra', 'Gorai.008G114000' => 'gra', 'Gorai.008G239700' => 'gra', 'GSVIVG01004910001' => 'vvi', 'GSVIVG01018534001' => 'vvi', 'GSVIVG01027123001' => 'vvi', 'GSVIVG01027632001' => 'vvi', 'GSVIVG01036302001' => 'vvi', 'HanXRQChr03g0087561' => 'han', 'HanXRQChr06g0164091' => 'han', 'HanXRQChr14g0461661' => 'han', 'HanXRQChr15g0486181' => 'han', 'HanXRQChr16g0512641' => 'han', 'HanXRQChr16g0512661' => 'han', 'HanXRQChr16g0512671' => 'han', 'HanXRQChr16g0520141' => 'han', 'HanXRQChr17g0549081' => 'han', 'Haze_09053' => 'cav', 'Haze_13040' => 'cav', 'Haze_13832' => 'cav', 'Haze_13954' => 'cav', 'Haze_15653' => 'cav', 'Haze_16800' => 'cav', 'Haze_21306' => 'cav', 'Hma1.2p1_0099F.1_g048990' => 'hma', 'Hma1.2p1_0138F.1_g063180' => 'hma', 'Hma1.2p1_0295F.1_g116760' => 'hma', 'Hma1.2p1_0654F.1_g196420' => 'hma', 'HPP92_000508' => 'vpl', 'HPP92_022095' => 'vpl', 'Hund04626' => 'sun', 'Hund04628' => 'sun', 'Hund04632' => 'sun', 'Hund11564' => 'sun', 'Hund14652' => 'sun', 'Hund17024' => 'sun', 'Hund26944' => 'sun', 'Lalb_Chr01g0008781' => 'lal', 'Lalb_Chr02g0149901' => 'lal', 'Lalb_Chr03g0033171' => 'lal', 'Lalb_Chr03g0033181' => 'lal', 'Lalb_Chr05g0225401' => 'lal', 'Lalb_Chr07g0189861' => 'lal', 'Lalb_Chr07g0189871' => 'lal', 'Lalb_Chr16g0379791' => 'lal', 'Lalb_Chr18g0044461' => 'lal', 'Lalb_Chr21g0311841' => 'lal', 'Lj1g0001462' => 'lja', 'Lj2g0018662' => 'lja', 'Lj2g0025913' => 'lja', 'Lj2P208T18' => 'lonja', 'Lj3g0015844' => 'lja', 'Lj3g0019779' => 'lja', 'Lj4g0015001' => 'lja', 'Lj5g0009680' => 'lja', 'Lj7P529T39' => 'lonja', 'Lj8C38T3' => 'lonja', 'Lsat_1_v5_gn_2_129401' => 'lsa', 'Lsat_1_v5_gn_3_3901' => 'lsa', 'Lsat_1_v5_gn_4_43321' => 'lsa', 'Lsat_1_v5_gn_9_52561' => 'lsa', 'Lsat_1_v5_gn_9_52601' => 'lsa', 'Manes.01G073600' => 'mes', 'Manes.02G033500' => 'mes', 'Manes.02G201000' => 'mes', 'Manes.02G201351' => 'mes', 'Manes.02G207809' => 'mes', 'Manes.02G221660' => 'mes', 'Manes.05G046300' => 'mes', 'Manes.05G046400' => 'mes', 'Manes.06G137300' => 'mes', 'Manes.14G033400' => 'mes', 'Mapoly0001s0248' => 'mpo', 'MBI04_g30219_MAGBIO' => 'mbi', 'MBI04_g30220_MAGBIO' => 'mbi', 'MBI06_g08475_MAGBIO' => 'mbi', 'MBI12_g34007_MAGBIO' => 'mbi', 'MBI12_g34009_MAGBIO' => 'mbi', 'MBI14_g37690_MAGBIO' => 'mbi', 'MD01G1080700' => 'mdo', 'MD01G1185000' => 'mdo', 'MD07G1120900' => 'mdo', 'MD07G1149600' => 'mdo', 'MD07G1149700' => 'mdo', 'MD07G1257300' => 'mdo', 'MD10G1005000' => 'mdo', 'Medtr1g076800' => 'mtr', 'Medtr4g023950' => 'mtr', 'Medtr4g024370' => 'mtr', 'Medtr4g102220' => 'mtr', 'Medtr5g011800' => 'mtr', 'Medtr5g011820' => 'mtr', 'Medtr6g060390' => 'mtr', 'Medtr6g060440' => 'mtr', 'Medtr7g117380' => 'mtr', 'MELO3C005581.2' => 'cme', 'MELO3C006193.2' => 'cme', 'MELO3C006830.2' => 'cme', 'MELO3C022498.2' => 'cme', 'Migut.A00835' => 'egut', 'Migut.E01044' => 'egut', 'Migut.F00437' => 'egut', 'Migut.F00438' => 'egut', 'Migut.N01543' => 'egut', 'MSTRG.12060' => 'ama', 'MSTRG.13786' => 'ama', 'MSTRG.27177' => 'ama', 'MSTRG.27178' => 'ama', 'Nitab4.5_0000072g0490' => 'nta', 'Nitab4.5_0000213g0150' => 'nta', 'Nitab4.5_0000457g0200' => 'nta', 'Nitab4.5_0000457g0210' => 'nta', 'Nitab4.5_0001153g0010' => 'nta', 'Nitab4.5_0001265g0010' => 'nta', 'Nitab4.5_0001281g0010' => 'nta', 'Nitab4.5_0001400g0010' => 'nta', 'Nitab4.5_0001715g0070' => 'nta', 'Nitab4.5_0001816g0190' => 'nta', 'Nitab4.5_0002326g0130' => 'nta', 'Nitab4.5_0003095g0020' => 'nta', 'Nitab4.5_0003095g0030' => 'nta', 'Nitab4.5_0003534g0040' => 'nta', 'Nitab4.5_0003732g0040' => 'nta', 'Nitab4.5_0003771g0050' => 'nta', 'Nitab4.5_0004463g0020' => 'nta', 'Nitab4.5_0004913g0020' => 'nta', 'Nitab4.5_0005989g0050' => 'nta', 'Nitab4.5_0007245g0010' => 'nta', 'Nitab4.5_0009420g0020' => 'nta', 'Nitab4.5_0009420g0060' => 'nta', 'Nitab4.5_0011403g0030' => 'nta', 'Nitab4.5_0011473g0020' => 'nta', 'Nitab4.5_0012404g0010' => 'nta', 'Nitab4.5_0012948g0010' => 'nta', 'Nn1g01254' => 'nnu', 'Nn1g01256' => 'nnu', 'Nn1g03534' => 'nnu', 'Nn1g03535' => 'nnu', 'Nn4g26376' => 'nnu', 'Nn4g26378' => 'nnu', 'Nn6g34946' => 'nnu', 'Nn7g37321' => 'nnu', 'Oeu008697.1' => 'oeu', 'Oeu011928.1' => 'oeu', 'Oeu021721.1' => 'oeu', 'Oeu022406.1' => 'oeu', 'Oeu025562.1' => 'oeu', 'Oeu028175.1' => 'oeu', 'Oeu030379.1' => 'oeu', 'Oeu040236.2' => 'oeu', 'Oeu055494.1' => 'oeu', 'Os02g0455400' => 'osa', 'Os08g0110600' => 'osa', 'Peaxi162Scf00013g00335' => 'pax', 'Peaxi162Scf00054g02313' => 'pax', 'Peaxi162Scf00054g02319' => 'pax', 'Peaxi162Scf00102g00124' => 'pax', 'Peaxi162Scf00218g00082' => 'pax', 'Peaxi162Scf00238g01014' => 'pax', 'Peaxi162Scf00271g00117' => 'pax', 'Peaxi162Scf00786g00014' => 'pax', 'Peaxi162Scf01372g00039' => 'pax', 'Peaxi162Scf01372g00040' => 'pax', 'PGR031G3043' => 'pgr', 'PGR042G0021' => 'pgr', 'PGR042G2260' => 'pgr', 'PGSC0003DMG400000225' => 'stu', 'PGSC0003DMG400003957' => 'stu', 'PGSC0003DMG400009590' => 'stu', 'PGSC0003DMG400012483' => 'stu', 'PGSC0003DMG400023015' => 'stu', 'PGSC0003DMG400023016' => 'stu', 'PGSC0003DMG400028028' => 'stu', 'PGSC0003DMG402025958' => 'stu', 'Phvul.002G060000' => 'pvu', 'Phvul.003G214900' => 'pvu', 'Phvul.004G128000' => 'pvu', 'Phvul.006G113200' => 'pvu', 'Phvul.007G112000' => 'pvu', 'Phvul.010G083300' => 'pvu', 'Phvul.010G083400' => 'pvu', 'Phvul.010G114300' => 'pvu', 'Potri.001G117600' => 'ptr', 'Potri.002G147100' => 'ptr', 'Potri.002G147200' => 'ptr', 'Potri.003G115200' => 'ptr', 'Potri.012G128900' => 'ptr', 'Potri.014G068900' => 'ptr', 'Potri.014G069000' => 'ptr', 'Potri.014G098800' => 'ptr', 'Potri.015G130500' => 'ptr', 'Pp3c15_12130' => 'ppa', 'Pp3c9_7130' => 'ppa', 'Prupe.2G144100' => 'ppe', 'Prupe.2G188300' => 'ppe', 'Prupe.2G281500' => 'ppe', 'Prupe.5G079600' => 'ppe', 'Prupe.8G007800' => 'ppe', 'Psat0s3923g0040' => 'psa', 'Psat0s4941g0040' => 'psa', 'Psat1g110040' => 'psa', 'Psat1g110120' => 'psa', 'Psat1g110160' => 'psa', 'Psat1g110240' => 'psa', 'Psat1g110960' => 'psa', 'Psat2g179520' => 'psa', 'Psat2g179600' => 'psa', 'Psat4g068720' => 'psa', 'Psat7g231480' => 'psa', 'PSO478G3115' => 'pso', 'PSO478G3261' => 'pso', 'PSO478G3295' => 'pso', 'PSO782G3102' => 'pso', 'PSO782G3118' => 'pso', 'PSO782G4638' => 'pso', 'QL04p060904' => 'qlo', 'QL05p030036' => 'qlo', 'QL08p052623' => 'qlo', 'QL08p052627' => 'qlo', 'QL08p053400' => 'qlo', 'QL09p018753' => 'qlo', 'QL10p051796' => 'qlo', 'QL12p015015' => 'qlo', 'RcHm_v2.0_Chr1g0337631' => 'rch', 'RcHm_v2.0_Chr1g0350051' => 'rch', 'RcHm_v2.0_Chr1g0359471' => 'rch', 'RcHm_v2.0_Chr1g0375051' => 'rch', 'RcHm_v2.0_Chr6g0251271' => 'rch', 'RcHm_v2.0_Chr7g0201531' => 'rch', 'Rhsim07G0004300' => 'rsi', 'Rhsim07G0028100' => 'rsi', 'Rhsim09G0193100' => 'rsi', 'Rhsim09G0193200' => 'rsi', 'Sabra01G0090300' => 'sbr', 'Sabra02G0114600' => 'sbr', 'Sabra02G0116200' => 'sbr', 'Sabra03G0079800' => 'sbr', 'Sabra14G0048600' => 'sbr', 'Sabra14G0048700' => 'sbr', 'Sabra14G0072400' => 'sbr', 'Sabra15G0143800' => 'sbr', 'SalBow4G0114' => 'sbo', 'SalBow4G1134' => 'sbo', 'SalBow4G2679' => 'sbo', 'SalBow4G2843' => 'sbo', 'SalBow5G1876' => 'sbo', 'Sc01g0000070' => 'sci', 'Sc01g0009220' => 'sci', 'Sc02g0002630' => 'sci', 'Sc07g0009430' => 'sci', 'Sed0001167' => 'sed', 'Sed0002567' => 'sed', 'Sed0005937' => 'sed', 'Sed0012711' => 'sed', 'Sed0015660' => 'sed', 'Sed0016867' => 'sed', 'Sed0019132' => 'sed', 'SEGI_06904' => 'sgi', 'SEGI_15006' => 'sgi', 'SEGI_23734' => 'sgi', 'SGA_v2.0_scaffold120G32814' => 'sas', 'SGA_v2.0_scaffold146G36183' => 'sas', 'SGA_v2.0_scaffold2G01119' => 'sas', 'SGA_v2.0_scaffold2G01151' => 'sas', 'SGA_v2.0_scaffold2G01154' => 'sas', 'SGA_v2.0_scaffold2G01156' => 'sas', 'SGA_v2.0_scaffold2G01160' => 'sas', 'SGA_v2.0_scaffold43G16351' => 'sas', 'Solyc01g091250.3' => 'sly', 'Solyc01g095920.4' => 'sly', 'Solyc03g083490.3' => 'sly', 'Solyc03g083500.3' => 'sly', 'Solyc06g034410.3' => 'sly', 'Solyc08g007480.2' => 'sly', 'Solyc08g079480.3' => 'sly', 'Solyc10g018200.2' => 'sly', 'Sopen01g037000' => 'spe', 'Sopen01g039650' => 'spe', 'Sopen03g023300' => 'spe', 'Sopen03g023310' => 'spe', 'Sopen06g011170' => 'spe', 'Sopen08g003440' => 'spe', 'Sopen08g027850' => 'spe', 'Sopen10g007440' => 'spe', 'Sp1g10940' => 'spa', 'Sp2g01770' => 'spa', 'Sp2g25480' => 'spa', 'Sp4g27400' => 'spa', 'Sp5g02470' => 'spa', 'TAR375G0802' => 'tar', 'TAR375G0965' => 'tar', 'TAR629G1211' => 'tar', 'TAR629G2900' => 'tar', 'THA.LOC104809445' => 'tha', 'THA.LOC104817245' => 'tha', 'THA.LOC104821400' => 'tha', 'Thecc.01G342700' => 'tca', 'Thecc.01G377600' => 'tca', 'Thecc.01G377700' => 'tca', 'Thecc.03G160700' => 'tca', 'Thecc.03G261900' => 'tca', 'Thecc.08G178000' => 'tca', 'Thhalv10001622m.g' => 'esa', 'Thhalv10004834m.g' => 'esa', 'Thhalv10006225m.g' => 'esa', 'Thhalv10008740m.g' => 'esa', 'Thhalv10023680m.g' => 'esa', 'TPR.G10678' => 'tpr', 'TPR.G16638' => 'tpr', 'TPR.G19568' => 'tpr', 'TPR.G31329' => 'tpr', 'TPR.G37668' => 'tpr', 'TPR.G40195' => 'tpr', 'TPR.G4796' => 'tpr', 'TWI14G1094' => 'twi', 'TWI18G1076' => 'twi', 'TWI23G0351' => 'twi', 'TWI23G0388' => 'twi', 'TWI23G0729' => 'twi', 'TWI39G0349' => 'twi', 'TWI59G0248' => 'twi', 'TWI59G1418' => 'twi', 'TWI81G0356' => 'twi', 'unitig_21.g20367' => 'ugi', 'unitig_8.g4779' => 'ugi', 'vmacro00225' => 'vma', 'vmacro09889' => 'vma', 'vmacro09890' => 'vma', 'vmacro13160' => 'vma', 'vmacro13407' => 'vma', 'VMungo0331G0686' => 'vmu', 'VMungo0331G0702' => 'vmu', 'VMungo0331G1739' => 'vmu', 'VMungo0464G0925' => 'vmu', 'VMungo0720G2233' => 'vmu', 'VMungo1215G1481' => 'vmu', 'VMungo1215G3383' => 'vmu', 'Zm00001eb299130' => 'zma' ) $gf_id = 'HOM05D000948' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000948' ) $data_identifier = 'HOM05D000948' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 4, 'aag' => (int) 1, 'ach' => (int) 8, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 2, 'arhy' => (int) 10, 'ath' => (int) 5, 'atr' => (int) 5, 'acertr' => (int) 6, 'cqu' => (int) 7, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 11, 'can' => (int) 9, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 1, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 3, 'col' => (int) 5, 'cpa' => (int) 5, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 9, 'din' => (int) 7, 'dzi' => (int) 7, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 4, 'gma' => (int) 14, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 2, 'sun' => (int) 7, 'lal' => (int) 10, 'lja' => (int) 7, 'lonja' => (int) 3, 'lsa' => (int) 5, 'mes' => (int) 10, 'mpo' => (int) 1, 'mbi' => (int) 6, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 4, 'egut' => (int) 5, 'ama' => (int) 4, 'nta' => (int) 26, 'nnu' => (int) 8, 'oeu' => (int) 9, 'osa' => (int) 2, 'pax' => (int) 10, 'pgr' => (int) 3, 'stu' => (int) 8, 'pvu' => (int) 8, 'ptr' => (int) 9, 'ppa' => (int) 2, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 6, 'qlo' => (int) 8, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 8, 'sbo' => (int) 5, 'sci' => (int) 4, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 8, 'sly' => (int) 8, 'spe' => (int) 8, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 3, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 7, 'twi' => (int) 9, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb299130' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1